PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0186600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 160aa    MW: 16645.5 Da    PI: 9.5308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0186600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C ++F ++  L  H++ H
  ORGLA08G0186600.1 59 FSCTYCRRRFYSSQALGGHQNAH 81
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-65686No hitNo description
PROSITE profilePS5015711.0325986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEKEIIGARS TTTTTTTAAA GDVNLDLRLV HSTAAGRQHT AATRNPAPPL AAAGDDRAFS  60
CTYCRRRFYS SQALGGHQNA HKLERSLAKR SRELSAGVTT AAAAPPPHPE LGWPYPPQGG  120
GGAAAAVVSW IADGGRRYGY RVHAAAAGGD AEDIDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0186600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648530.11e-84zinc finger protein 2
TrEMBLI1QKB51e-111I1QKB5_ORYGL; Uncharacterized protein
STRINGORGLA08G0186600.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-18zinc finger protein 2