PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0177200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 648aa    MW: 68448.2 Da    PI: 10.2592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0177200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.4e-102861337
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                       +W t Ed+ll++av ++G+ +W+++a++m+  R++
  ORGLA08G0177200.1 28 SWGTSEDLLLACAVSRHGTASWDAVAKEMQ-SRCP 61
                       6*****************************.9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2E-62581IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-62581IPR009057Homeodomain-like
PROSITE profilePS500906.4352879IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-62892IPR009057Homeodomain-like
PfamPF002493.2E-92861IPR001005SANT/Myb domain
CDDcd001673.68E-62978No hitNo description
Gene3DG3DSA:1.20.920.102.6E-14270414IPR001487Bromodomain
SMARTSM002971.1E-9286398IPR001487Bromodomain
SuperFamilySSF473707.33E-15288395IPR001487Bromodomain
PfamPF004393.8E-8305382IPR001487Bromodomain
PROSITE profilePS5001410.098305379IPR001487Bromodomain
CDDcd043695.19E-11308393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
PPDRATPASR RSRRLRRRRR RGPGAGRSWG TSEDLLLACA VSRHGTASWD AVAKEMQSRC  60
PSTAVFTPTT CRLRFRVLHR RFSGGVTAEN EDADGGEEEE EPDAAAVAGW VEELRELRVA  120
ELRREVEKYD LSIGSLQSKV KRLKEEREKS ISGETKPPPA KEEEEDVRKG SPEEAGAVED  180
RVSGHESGRS CKESNSSDLK RPENDPAVAD DDDREAEEEE EAAAAPAAGD IAVKEEASGE  240
SVAGSKEADA EKESSDVQSS ASPSRRRRRK GGGGGEEAEA ASPSVSVPLP AAEAEPLVAF  300
LESVRTSKAG AVFERRLDSQ DGERYSGTIR RHVDLETVRS RLVGATAAAC YASASEFYRD  360
MMLLCANALV FFPRGSPEHA AALQLRALVS KQVSKDRQPH AGAKAPAAAA AEEKKKPAKA  420
DADIAGPLLE KAPIIVCRKR SSIAKAAAAA AKGEKAEKAE MDKKEKDGSE EKKAAAAATT  480
ATAAATAKDK KARGMRTNKS RGPARNQKTA KLSETGEGTK KSDKKGGGGG GSSSAAAAAG  540
GVAKKRNAVD FLNRMNQNGS PSTERVSLLE TLKLSAAATE QQKKSSSSSG KGDGRKEAGG  600
SGSKKGAAAS TPPGRRIGRP PKRAAAPPTP PPSKRAKDDK PTRKRGKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219RRLRRRRR
21220RRLRRRRRR
31320RLRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0177200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588400.0HQ858840.1 Oryza sativa Japonica Group isolate UT1508 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650506.10.0uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X2
TrEMBLI1QK210.0I1QK21_ORYGL; Uncharacterized protein
STRINGORGLA08G0177200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-16DNA-binding bromodomain-containing protein