PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0173000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 443aa    MW: 47232.9 Da    PI: 6.4222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0173000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00046359379323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F  k + ++H +++
  ORGLA08G0173000.1 359 CRKCGKAFAVKGDWRTHEKNC 379
                        *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-6341377No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5344377IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAHLPP PLPPPYAALY PTAGGVGVGV  60
GAHHHHHQYP PAAFFHPPPV HQQHQAPPSP PLREALPLLS LSPTPARRGG VVDAAADSDS  120
DDDDDGDCCY HHLQDQEGAA AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE  180
VAGTTADIDA AVALRIGLPA GGTEADLLSG LTGAGIEHEE EEEDCKVDGG GSGGDDEVVP  240
LGFSSTPIGK LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQMQM HMWGHGSQYR  300
KGPESLRGVQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYKR KHGLKPFLCR  360
KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHAHTA LDADDDDGAV  420
SDADAVVRPS SSMAASSLQP PPR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0173000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875660.0AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649538.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-111ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1QJX90.0I1QJX9_ORYGL; Uncharacterized protein
STRINGORGLA08G0173000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]