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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ORGLA08G0167200.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 337aa MW: 36177.5 Da PI: 4.436 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 88.4 | 3.9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l +s
ORGLA08G0167200.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
79********************************************9997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 29.422 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 6.54E-30 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.99E-38 | 2 | 75 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR 60 RGVEDVILRY MNLSEHDRGE AIQNREEIQQ EIYSSQQQLQ ITEDRLRMFE PDPAAFGTSS 120 EVDGCEKYLM ELLTRVVERK NNLLSSHMAP FDATTAAMQG ADGTQMYVSQ ADGLATFGGD 180 AAMWGPDGGA DPGHPMFSAS DPLIYLRDHD VFDANSQVAG LHGGDPCAAG GAAAAAAAVG 240 CVDDDVAGGH AAAADAWRQA YTCTELLSTL IPTTPFPLMP HCLGPEDQYL SMEHGMVAAA 300 QEPVEASTAS CSYVPSDENS GTPVMAYDSN PPPANIA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_B | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_C | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_D | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_A | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_B | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_C | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_D | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6c9l_A | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | ORGLA08G0167200.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FM956504 | 0.0 | FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025883256.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
| TrEMBL | I1QJS1 | 0.0 | I1QJS1_ORYGL; Uncharacterized protein | ||||
| STRING | ORGLA08G0167200.1 | 0.0 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4953 | 33 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22130.1 | 1e-48 | AGAMOUS-like 104 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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