PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0155600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 380aa MW: 41482.9 Da PI: 10.0708 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5.2e-34 | 26 | 123 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.eng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d+++++++sw ++g +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv e+ weF+++ F+k ORGLA08G0155600.1 26 FLTKTYQLVDDPATDHVVSWGdDDGgesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 108 9*******************9544478889****************************************999.........********** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll++i+r+ks+ ORGLA08G0155600.1 109 GEKQLLCEIHRRKSA 123 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-35 | 16 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.5E-55 | 22 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.52E-31 | 23 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-29 | 26 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEWEEESEAA RQKAAAASAS VVPAPFLTKT YQLVDDPATD HVVSWGDDDG GESASSFVVW 60 RPPEFARDIL PNYFKHSNFS SFVRQLNTYG FRKVVPERWE FANEFFRKGE KQLLCEIHRR 120 KSAAATWPPF PPPPPPFFAP RHFAAGAFFR HGDGMLHGRL GALVTTTERR HWFESAALPV 180 APSSRLLSQL GPVIAPARRA AATPEEEALM QENHRLRRGN AALVQELAHM RKLYSDIIYF 240 VQNYVRPVAP SPAAAAALHG LGVLRPPPAG GKAPASEVRG ASGRSATSSS SLTVAEDQPT 300 LLALRLPRTT EKIINEVSGG NRGGSTKLFG VHLSSADEQT SSGASRKRSP PQEQPPTSPA 360 PKRTLVVEHS ELRLSIVSPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 15 | 120 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 15 | 120 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 15 | 120 | 19 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0155600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004693 | 0.0 | AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649314.1 | 0.0 | putative heat stress transcription factor B-4a | ||||
Swissprot | Q6Z9R8 | 0.0 | HFB4A_ORYSJ; Putative heat stress transcription factor B-4a | ||||
TrEMBL | I1QJF5 | 0.0 | I1QJF5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0155600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-75 | heat shock transcription factor B4 |