PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0138500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 292aa    MW: 31588.4 Da    PI: 6.4397
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0138500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25e-302174255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       +rlrWt +LHerFv av++LGG+++AtPk++l++m v+gLtl+h+kSHLQkYR 
  ORGLA08G0138500.1 21 ARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRQ 74
                       7****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-291878IPR009057Homeodomain-like
SuperFamilySSF466897.53E-151976IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-212174IPR006447Myb domain, plants
PfamPF002491.3E-52273IPR001005SANT/Myb domain
PfamPF143796.8E-15138178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
SQQQQQHAGE APASATAAAR ARLRWTGQLH ERFVLAVAEL GGADRATPKS VLRAMAVPGL  60
TLYHLKSHLQ KYRQAVSRGG NGGGGGSGSL NDRSSSSERQ PADHDGDSAA DEPRTIAYDG  120
DSDGDAKEAL RDSSRSMVQM QREVQRKLQE QIEVQRHLQL RMEAQGRYLQ SVLRRAQQVL  180
ADHSLASSPE AATAELSELA SAVDIECMSS SSPPRHHRQS ATTDSCVTTT SSSEAESKAA  240
GSKRLHTSDC TVEQPVQGKR AFNFLQRHNQ ADQEEEYAGA EDGSSSEIDL NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182075156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182075156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182075156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182075156Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0138500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703380.0AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.11e-175myb-related protein 2
TrEMBLI1QIY40.0I1QIY4_ORYGL; Uncharacterized protein
STRINGORGLA08G0138500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.33e-42G2-like family protein