PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0137400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 352aa    MW: 36597 Da    PI: 6.2758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0137400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14130176354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  ORGLA08G0137400.1 130 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 176
                        78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-14130179No hitNo description
PfamPF000104.1E-12130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15131185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15131185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.9E-4225276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MWEAVGGGDG TALLPWPGSA AAATTSGAAA PLYMSPAAAA AAPFAAGEQL PVEQPFYFDG  60
GGGVAGHNHH PHHHQYGMEA PPPMTMMQMG GGGSSSSRMV VSGLLGTLQA ELGRMTAKEI  120
MDAKALAASR SHSEAERRRR QRINGHLARL RSLLPNTTKT DKASLLAEVI EHVKELKRQT  180
SAMMEDGAAG GEAAAAPVVL LPTEDDELEV DAAADEGGRL VARASLCCED RADLIPGIAR  240
ALAALRLRAR RAEIATLGGR VRSVLLIAAV EEEDPDEAGN DDDGEHGYGV AASHRRHELV  300
ASIHEALRGV MNRKAASSDT SSSGAGGGGG SIKRQRMISA HDQQGSFNSS GW
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0137400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.10.0transcription factor bHLH30
TrEMBLI1QIX30.0I1QIX3_ORYGL; Uncharacterized protein
STRINGORGLA08G0137400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-39bHLH family protein