PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0137200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 268aa    MW: 27909.6 Da    PI: 5.652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0137200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.51.2e-34892073122
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 
                         ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt  +s +a ++            ++++++a++
  ORGLA08G0137200.1  89 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMA 177
                        689**********************************************************9955555333221...111111222223334 PP

                TCP  93 saakskksqksaasalnlakesrakarara 122
                        +aa s  ++k +as ++  + s+a+ar r 
  ORGLA08G0137200.1 178 AAAASAAKEKGEASSSSTTNASSARARNRG 207
                        444555555555555666667777777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR015117.7E-64959IPR020467Potassium channel, voltage dependent, Kv1.4
PRINTSPR015117.7E-66271IPR020467Potassium channel, voltage dependent, Kv1.4
PfamPF036343.5E-3290198IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2590148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADVYTA GHRQDEETLE AVLRQPVTTT AAAAAAAAAA  60
AVEGGGGGGG GGAGGSPAAA AAATRRRPFR TDRHSKIRTA QGVRDRRMRL SVGVARDFFA  120
LQDKLGFDKA SRTVEWLLTQ SKHAIDRLTL PDSADAAAAP AFAAAPPPAD QHSSAMAAAA  180
ASAAKEKGEA SSSSTTNASS ARARNRGHDG SLPVAPMDER GRRGVELDWT AAAAASTEQP  240
MDGLEYYFQY YNHLEEIMSC DPTTTTDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0137200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-119transcription factor TB1
TrEMBLI1QIX10.0I1QIX1_ORYGL; Uncharacterized protein
STRINGORGLA08G0137200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.15e-24TCP family protein