PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0133100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 209aa MW: 23328.5 Da PI: 4.0425 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.2 | 1.8e-05 | 97 | 135 | 11 | 45 |
HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 ++e+Le+++ +++p+ ++r++L ++ +++ +q+k ORGLA08G0133100.1 97 EVEALERVYTDCPKPTSARRQQLLCECpilaNIEPKQIK 135 689************************999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF63562 | 1.57E-24 | 1 | 102 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
Gene3D | G3DSA:3.90.940.10 | 3.5E-27 | 12 | 97 | IPR012293 | RNA polymerase subunit, RPB6/omega |
Pfam | PF01192 | 9.1E-10 | 59 | 97 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
CDD | cd00086 | 0.00142 | 95 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-4 | 98 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAEDDYNDMD MGYEDEPPEP EIEEGAEEEP ENNNEDAVDD VVGAEDDREQ EKTARPWKTS 60 KYMTKYERVR ILGTRALQIS MNAPVMVELE GGTDPLEVEA LERVYTDCPK PTSARRQQLL 120 CECPILANIE PKQIKFSLFS VTKTLVMAVL GTQVAAHHNG HGMSHENHTQ ESESSVEQHD 180 PESQDDISIK ATPADESPPE ETSAAPTKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3h0g_F | 2e-15 | 59 | 109 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
3h0g_R | 2e-15 | 59 | 109 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
5u0s_f | 2e-15 | 59 | 109 | 71 | 121 | RNA polymerase II subunit Rpb6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0133100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121807 | 1e-140 | AK121807.1 Oryza sativa Japonica Group cDNA clone:J033097N04, full insert sequence. | |||
GenBank | CT833854 | 1e-140 | CT833854.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1QIT0 | 1e-152 | I1QIT0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0133100.1 | 1e-153 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23751 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 9e-17 | HD-ZIP family protein |