PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0122300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 449aa    MW: 48235 Da    PI: 4.4313
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0122300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.23.3e-3980178199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e  +dam++l+y+Ae+ra+dPv G+++vi +l++qle   a
  ORGLA08G0122300.1  80 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTA 171
                        7******************************************************************************************* PP

             DUF260  93 elallke 99 
                        el+++ +
  ORGLA08G0122300.1 172 ELNTVLH 178
                        **98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01779180IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3780176IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTSTTTNTTT TTTTNNNNNP VSTTTTTTAS HQRQSLPVAA RPPHSSGSGS GSGGSHRGAS  60
CGGSGGGGGG GGGGGGTNQA CAACKYQRRK CNPDCPMAPY FPADQQRRFL NAHRLFGVSN  120
ILKTLRHLKP ELCDDAMRTL IYQAEMRAHD PVGGCCRVIC DLERQLELDT AELNTVLHHL  180
AMCRQADAAG ASGSVAATLP AGVLEDACAD LDVTSSNQPL LLSAEHEVVD ALYANQEADA  240
AILHADGHHN QDESQREHHH GQPQQLYDYF YYDSTAGDDV SSKPNLDINV DGMQHFDFDT  300
NYDAEHKVEL TSDHQMPVGV DEHNQIDDKG FEIKSGPSLV DVFDLRQEEE QVQTVDVNTD  360
IEVKEMVDMN ADIDVKTMVD ENSNIDIIKT MVDVNADIVD VVKTVVDVNG DIGVKEELPE  420
LENGKIIAGD ATQMAESSHC RLGLGVSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-26762007127LOB family transfactor Ramosa2.1
5ly0_B2e-26762007127LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16376SGGGGGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0122300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883262.10.0uncharacterized protein LOC9266602
TrEMBLA0A0D3H0140.0A0A0D3H014_9ORYZ; Uncharacterized protein
TrEMBLI1QIH20.0I1QIH2_ORYGL; Uncharacterized protein
STRINGORGLA08G0122300.10.0(Oryza glaberrima)
STRINGOBART08G13930.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-37LOB domain-containing protein 22