PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0084900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 25007.5 Da PI: 11.6289 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 173 | 195 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H ORGLA08G0084900.1 173 FKCSVCGRSFSSYQALGGHKTSH 195 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.11E-5 | 172 | 199 | No hit | No description |
SMART | SM00355 | 0.0081 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.4E-12 | 173 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.78 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAFLGQSRLY DGISWNSHLS MAFLVPPVSV ATSAPSLSFP SSPFLLLSLS LSLFSASRPV 60 AGAKAARVRR ERRRRRRRRR RVANGETEAL HAAVLKEEEQ QHEVEEAAVV TSSSATSGEE 120 GGHLPQGWAK RKRSRRQRSE EENLALCLLM LALGGHHRVQ APPPLSAPVG AEFKCSVCGR 180 SFSSYQALGG HKTSHRFKLP TPPASPVLAP ASSEVQSPLA FSPRNSAAAR I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 79 | RERRRRRRRRR |
2 | 72 | 80 | RRRRRRRRR |
3 | 73 | 80 | RRRRRRRR |
4 | 74 | 80 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0084900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649250.1 | 1e-75 | zinc finger protein 1, partial | ||||
Swissprot | Q42430 | 2e-36 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | I1QHE8 | 1e-161 | I1QHE8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0084900.1 | 1e-162 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 8e-10 | zinc-finger protein 1 |