PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA08G0081300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 159aa MW: 18034.9 Da PI: 7.772 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.8 | 1.8e-08 | 101 | 134 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + ORGLA08G0081300.1 101 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 134 569*****************************87 PP | |||||||
2 | ELK | 28.1 | 4.6e-10 | 55 | 76 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ ORGLA08G0081300.1 55 ELKHELKQGYKEKLIDIREEIL 76 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.039 | 55 | 75 | IPR005539 | ELK domain |
SMART | SM01188 | 0.004 | 55 | 76 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.5E-5 | 55 | 76 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 75 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-11 | 77 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-16 | 77 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.40E-11 | 78 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 82 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 95 | 134 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
ASPGEGTGAT MSDGEDDQAD SEANMYDPSL DGADNMGFGL PTESERSLME RVRQELKHEL 60 KQGYKEKLID IREEILRKRR AGKLPGDTTS TLKAWWQSHA KWPYPTEEDK ARLVQETGLQ 120 LKQINNWFIN QRKRNWHSNP SSSTSVKTKR KSNAGDNNS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 6e-14 | 78 | 142 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA08G0081300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT834586 | 0.0 | CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence. | |||
GenBank | CT834587 | 0.0 | CT834587.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN088H02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696167.1 | 1e-114 | PREDICTED: homeobox protein knotted-1-like 13 isoform X1 | ||||
Swissprot | Q0J6N4 | 1e-116 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A0E0ATH4 | 1e-115 | A0A0E0ATH4_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G09500.1 | 1e-115 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 4e-87 | KNOTTED1-like homeobox gene 3 |