PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0075900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 289aa    MW: 30090.1 Da    PI: 11.7647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0075900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001194116123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C + F ++  L  H++ H
  ORGLA08G0075900.1  94 FKCNYCQRKFYTSQALGGHQNAH 116
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-691121No hitNo description
PROSITE profilePS5015711.57294121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
RLRGVVVVVV VGRKARWWPR RRRRWRRRRR RVELDLLGAL RAEEVMPAEK GKAAVVMVGE  60
AVAPSVEERA SAVAAAAANG GGGGGGGEAR RRLFKCNYCQ RKFYTSQALG GHQNAHKRER  120
SLAKRGAAVA AAAAAAGRGL YGFGDPFVPH HLRFRSLWPY PAAAGAARTT PFLGRGSASA  180
AAAAAAPFYG AVHHGWSAQP PSSLQGIAAR HAAAERPVYP ADAFGYGAGS SSSRATGAPA  240
SAGLRWAEGG GSGTIHSAAA AAAGEQHTAA EVKAQEEMSS SKIDLTLKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926RRRRRWRR
21929RRRRRWRRRRR
32229RRWRRRRR
42230RRWRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0075900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875762.11e-135zinc finger protein 4
TrEMBLI1QH580.0I1QH58_ORYGL; Uncharacterized protein
STRINGORGLA08G0075900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-17zinc-finger protein 1