PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0066300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 292aa    MW: 29260.3 Da    PI: 5.6838
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0066300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.2e-071759542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C  +++  ++ +C  +   lC  C  + H        H++vpl
  ORGLA08G0066300.1 17 ACGVCGSA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 59
                       6******9.*********************66899999999986 PP
2CCT66.76.4e-23193236144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  ORGLA08G0066300.1 193 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 236
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.8E-111359IPR000315B-box-type zinc finger
PROSITE patternPS0019701321IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
PROSITE profilePS501199.571859IPR000315B-box-type zinc finger
CDDcd000215.01E-81859No hitNo description
PfamPF062031.9E-17193235IPR010402CCT domain
PROSITE profilePS5101716.479193235IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MMASDGSASP ASCGGAACGV CGSAATVYCA ADAAALCVPC DAAVHAANPL ASRHDRVPLA  60
VAMAAASSGV YDHLFAPDDD AASSWAAAAA AGAAVQGQGQ GSPNDSSSSF TNDSAGGGGG  120
GGGAERILFD LLSDVDIMSC GSGGLASSFD GAAAPPLWLH PGQLAALTPW SPADSVVVPT  180
SAAGAVAAAA AAREERVRRY REKRKNRKFQ KTIRYASRKA YAEARPRIKG RFVKRATTAA  240
ASSSSDDDST AAATEEAKFW LSFSDDGRAD GVGFYMDSTT AATAAYGVVP TF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0066300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054950.0AP005495.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03.
GenBankAP0057990.0AP005799.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648718.11e-130zinc finger protein CONSTANS-LIKE 3
TrEMBLI1QGW20.0I1QGW2_ORYGL; Uncharacterized protein
STRINGORGLA08G0066300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-10CONSTANS-like 5