PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0051100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 293aa    MW: 32231.7 Da    PI: 8.5858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0051100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.19e-50111581129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                        +ppGfrFhP+d+elv +yL +k+++                 +i +vd++k+ePwdLp ++  + kewyfFs rd+kyatg+r+nrat+sgy
  ORGLA08G0051100.1  11 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGY 99 
                        79********************99888555541...1455546***************7666789*************************** PP

                NAM  83 Wkatgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129
                        Wkatgkd++++++      +           vg++ktLvfy+grapkg+kt+Wvmhe+rle
  ORGLA08G0051100.1 100 WKATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 158
                        ************86666550..155566666***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-564176IPR003441NAC domain
PROSITE profilePS5100552.99511176IPR003441NAC domain
PfamPF023654.4E-2612157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSFIGMVEAR MPPGFRFHPR DDELVLDYLL HKLAAGGRGG GVYGGGGGVA IVDVDLNKCE  60
PWDLPDAACV GGKEWYFFSL RDRKYATGHR TNRATRSGYW KATGKDRSIT RRSSISSGEP  120
SSSAAAAAVG MRKTLVFYRG RAPKGRKTEW VMHEFRLEPQ PLHLKEDWVL CRVFYKTRQT  180
IPSPSSEEAV TLPNELDLPA TPSLPPLIDA YIAFDSAPMT TPSMVGSYEQ VSCFSGLPAL  240
PMKGSISFGD LLAMDTSAEK KAIRVLHNSN TAKLELSPDW GQESGLSQMW NPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43617612165NO APICAL MERISTEM PROTEIN
1ut4_B2e-43617612165NO APICAL MERISTEM PROTEIN
1ut7_A2e-43617612165NO APICAL MERISTEM PROTEIN
1ut7_B2e-43617612165NO APICAL MERISTEM PROTEIN
4dul_A2e-43617612165NAC domain-containing protein 19
4dul_B2e-43617612165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0051100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648318.10.0NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE62e-78NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLI1QGG00.0I1QGG0_ORYGL; Uncharacterized protein
STRINGORGLA08G0051100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-76NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]