PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0039300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20140.2 Da PI: 4.8349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.2e-17 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ + ++ g ORGLA08G0039300.1 38 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLSAISISG 87 588******.**********865...5*******************99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-18 | 37 | 95 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.04E-20 | 37 | 79 | No hit | No description |
PROSITE profile | PS51032 | 20.442 | 38 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-25 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-26 | 38 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 39 | 50 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-9 | 39 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MADAVEQHHQ QEEIAAAMTT PTPQQMMMRR RRARASSEYL GVRRRPWGRY AAEIRNPYTK 60 ERHWLGTFDT AEEAAVAYDL SAISISGAAA ARTNFLYPDM HHHHPSPPQH ALSPAVPPPP 120 PPPPPSPLYD DDNADDDYQL QAAAAAEEVE AGDDESLTIA TILQSFQYQQ SVPPASSGSM 180 FY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 37 | 95 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0039300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241762 | 0.0 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. | |||
GenBank | AP005164 | 0.0 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649703.1 | 6e-68 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | I1QG42 | 1e-129 | I1QG42_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0039300.1 | 1e-130 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-25 | ERF family protein |