PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0029800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 325aa MW: 33753.5 Da PI: 6.9551 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.4e-07 | 263 | 306 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 g+W++ +d l++a k+++++ +W+++a ++ g+t c r ORGLA08G0029800.1 263 GSWSAGDDRALLNALKEFPKDtamRWEKVAVAVP-GKTKAACMKR 306 79********************************.*******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.066 | 169 | 222 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.877 | 171 | 212 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-5 | 171 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-7 | 171 | 214 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.72E-5 | 172 | 214 | No hit | No description |
Pfam | PF13921 | 5.5E-5 | 173 | 213 | No hit | No description |
SuperFamily | SSF46689 | 2.62E-9 | 261 | 311 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-6 | 261 | 313 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-5 | 262 | 313 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.771 | 263 | 311 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 5.7E-6 | 263 | 306 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.24E-6 | 265 | 311 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEFIDDDWDY QPRARVIHSR SNANSNGATT ASSSQPTRSL PHTAACAAAA VALLAAAYYL 60 LPDYQVLASV VVWVASSLLL APFAPSSATG GDVSVGRGDP LPEQEPVEEP VSDPAPTSRR 120 GRRQSSSSNP TPPPPKPSDP IAPPPPRHAA AAAAAAATAV SDGGEAVEDA GEWTDQEMDI 180 LRRQMVKHPA GEPQRWEKIA AAFGGRRTPE SVIRAAKSGG GAAAAGASFD QFLRKRKPLD 240 PRSEATDAGG GNAGGGGGES GDGSWSAGDD RALLNALKEF PKDTAMRWEK VAVAVPGKTK 300 AACMKRVTEL KRDFRSSKAA SEAAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 237 | LRKRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0029800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073617 | 0.0 | AK073617.1 Oryza sativa Japonica Group cDNA clone:J033051J11, full insert sequence. | |||
GenBank | AK103973 | 0.0 | AK103973.1 Oryza sativa Japonica Group cDNA clone:001-016-D01, full insert sequence. | |||
GenBank | AP004698 | 0.0 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650326.1 | 0.0 | transcription factor MAMYB | ||||
TrEMBL | I1QFU7 | 0.0 | I1QFU7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0029800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10311 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 2e-39 | MYB_related family protein |