PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0029000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 727aa    MW: 80395.4 Da    PI: 4.3703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0029000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-5291421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp GfrFhPtdeelv +yLk k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+
  ORGLA08G0029000.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDR 100
                        699************************99999***************96446677888********************************** PP

                NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + sk    k++++g+kktLvf++grapkge+t W+mheyr 
  ORGLA08G0029000.1 101 VIRSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                        ****988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-593163IPR003441NAC domain
PROSITE profilePS5100557.5689163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KQASPSTGAF PQLIGSQQNI HDNNELATVS APMLPHEDFN  300
NFPLGAIGNF DGNMNPRDPV EEFLNQTIAD PDEHSSTTSK AQYDSDTGII PTEFENHGVM  360
QGEFMDDLSG LENLDFWPDD RNPQLSALYE DTPLLPYDST DQDVLSMDSG AESLQDLFNS  420
MDDSNARNNV WGNEPFLQGT GFPMSWPLQP NSAFPNQGTA NRRLMLQLSE SLSPDFDASM  480
TRDECEDEEP GIVVTSKYVN EAPEESTAEK DMPSDGDDAE PTGITILRRR TASSFSDGDD  540
AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVQRVRL  600
QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA  660
ANAKSVVRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPSYIIWLV LSVALVLLIS  720
LGIYGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-45916420169NAC domain-containing protein 19
3swm_B2e-45916420169NAC domain-containing protein 19
3swm_C2e-45916420169NAC domain-containing protein 19
3swm_D2e-45916420169NAC domain-containing protein 19
3swp_A2e-45916420169NAC domain-containing protein 19
3swp_B2e-45916420169NAC domain-containing protein 19
3swp_C2e-45916420169NAC domain-containing protein 19
3swp_D2e-45916420169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0029000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329680.0CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650288.10.0NAC domain-containing protein 14 isoform X1
TrEMBLI1QFT90.0I1QFT9_ORYGL; Uncharacterized protein
STRINGORGLA08G0029000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.19e-70NAC 014