PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0004000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 334aa    MW: 36826.5 Da    PI: 11.0836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0004000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1583.9e-49311562128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+
  ORGLA08G0004000.1  31 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVK 121
                        79***************************.89***************888889*************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++++ +glkktLvfy g+apkg +++W+m+eyrl
  ORGLA08G0004000.1 122 VEGDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 156
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.0330176IPR003441NAC domain
SuperFamilySSF1019419.55E-5730176IPR003441NAC domain
PfamPF023651.2E-2432156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRGSDHHQDV VAAPRGGGGG GDDGQAHDMV MPGFRFHPTE EELIEFYLRR KVEGKRFNIE  60
LIAFVDLYRY DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV  120
KVEGDRPIGL KKTLVFYVGK APKGLRSSWI MNEYRLPHGD ADRYQKEISL CRVYKRPGIE  180
DNFHLTGTTT KSSGSKAAAA MGKKHAAANR TSSTAAAAAP RLAPMFDGGG GGQARATASA  240
AKKRAATAAA AKRRHRRRHR RPWSLQRRRH STSSRVCSRV CHRWYGAPLT RGSPTGAGTG  300
DISHPTTCAG SGSEGEVRER GRGRSSPTRP VANP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-543217619165NO APICAL MERISTEM PROTEIN
1ut4_B2e-543217619165NO APICAL MERISTEM PROTEIN
1ut7_A2e-543217619165NO APICAL MERISTEM PROTEIN
1ut7_B2e-543217619165NO APICAL MERISTEM PROTEIN
3swm_A4e-543217622168NAC domain-containing protein 19
3swm_B4e-543217622168NAC domain-containing protein 19
3swm_C4e-543217622168NAC domain-containing protein 19
3swm_D4e-543217622168NAC domain-containing protein 19
3swp_A4e-543217622168NAC domain-containing protein 19
3swp_B4e-543217622168NAC domain-containing protein 19
3swp_C4e-543217622168NAC domain-containing protein 19
3swp_D4e-543217622168NAC domain-containing protein 19
4dul_A2e-543217619165NAC domain-containing protein 19
4dul_B2e-543217619165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251268KRRHRRRHRRPWSLQRRR
2252260RRHRRRHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0004000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0331890.0KP033189.1 Oryza sativa cultivar Dong Jin NAC-related protein 49 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.11e-137PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLI1QF390.0I1QF39_ORYGL; Uncharacterized protein
STRINGORGLA08G0004000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-96NAC domain containing protein 35