PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0257500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 631aa    MW: 67356.8 Da    PI: 6.0178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0257500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-055981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F r  nL+ H r H
  ORGLA07G0257500.1 59 FVCEVCGKGFQRDQNLQLHRRGH 81
                       89*******************88 PP
2zf-C2H215.64.6e-05137159123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk++  + +Lk H +t+
  ORGLA07G0257500.1 137 WTCQRCGKRYAVQADLKAHTKTC 159
                        58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-85881No hitNo description
SMARTSM003550.0145981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355981IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-55981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035588102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-8132157No hitNo description
SMARTSM0035590137157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787137165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV  60
CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHNPTRALGD  120
LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT  180
HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKE EEVKEKEKEK ELEENEDSPV  240
AEVDEPQPSQ AVAEVPQQCA PSPPSPPPIL QEHPQPVVAV VPNVDEQEVV AKPAVIAKIE  300
VEDERDEEVC FQEADRYKDA ELEDSNLLDN DTPMLPCFLP SPSEAIGTDG SSTSCGTGSS  360
VTNAIAPATT TSTFAGLFAS VTTSSTPQSR SLRDLIGVDP TFLCLAIGAP SSLFPQTNAS  420
DPCSFAPPPA PHMSATALLQ KAAEVGASQS SSSFLKEFGL AASTSSSPPS KLSQGRFTTG  480
NTPTTSHPHP HPHPHPHPPQ GRFMDNVPQP PLPAKLPHRM FTDNSVQQWH HRSNQQMEME  540
PGPMLPGGLG LGLTYDSGNS GLPDLMMGPS ALYGPKPATL DFLGLGIGGT MGGSTANGGL  600
PALMVGGELD MGSAQAPWEE AKRKTNGRTI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29133195365Zinc finger protein JACKDAW
5b3h_F1e-29133195365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0257500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041850.0AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12.
GenBankAP0042760.0AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLI1QEN30.0I1QEN3_ORYGL; Uncharacterized protein
STRINGORGLA07G0257500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.14e-93C2H2 family protein