PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0207300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 377aa MW: 40265.5 Da PI: 9.6837

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0207300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.7e-10	174	221	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ORGLA07G0207300.1 174 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 221 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	170	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	172	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-10	174	228	No hit	No description
SuperFamily	SSF57959	1.21E-10	174	225	No hit	No description
Pfam	PF00170	8.8E-9	174	219	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.16E-21	175	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
GDAAQARRSA LPGAEPQPQP QPPLPAPAHP XLRRRRRRRR AHAAAAAASA APPARQIXGG 60 LPLPGRPGPR GGADGGGFDE IGSEDDLFST FMDMEKIAGA DRDRAAETSS PPRPTKHRHS 120 ASFDGFAFGA GAGGPGPGLG KQQDGAGGVF SEVMEAKKAM SSEQLAELAA IDPKRAKRIL 180 ANRQSAARSK ERKARYITEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ 240 AMEQQAQLRD ALNDALKQEV ERLKIATGEM AKSNDAYNTG MQQVPYSPSF FQLSDQHAVQ 300 HHAGVQQLPH QFQQPHPSVP SHQMLSHPNS LSDMMQQDSL GRLEGLDIGK GPVAVKNEAE 360 VVVKSEGSSI SAGGEGH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

GDAAQARRSA LPGAEPQPQP QPPLPAPAHP XLRRRRRRRR AHAAAAAASA APPARQIXGG  60
LPLPGRPGPR GGADGGGFDE IGSEDDLFST FMDMEKIAGA DRDRAAETSS PPRPTKHRHS  120
ASFDGFAFGA GAGGPGPGLG KQQDGAGGVF SEVMEAKKAM SSEQLAELAA IDPKRAKRIL  180
ANRQSAARSK ERKARYITEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ  240
AMEQQAQLRD ALNDALKQEV ERLKIATGEM AKSNDAYNTG MQQVPYSPSF FQLSDQHAVQ  300
HHAGVQQLPH QFQQPHPSVP SHQMLSHPNS LSDMMQQDSL GRLEGLDIGK GPVAVKNEAE  360
VVVKSEGSSI SAGGEGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	39	RRRRRRRR
2	33	39	RRRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0207300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102562	0.0	AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646776.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-134	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	I1QD81	0.0	I1QD81_ORYGL; Uncharacterized protein
STRING	ORGLA07G0207300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-75	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]