PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0199200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 380aa MW: 40426.9 Da PI: 4.8231 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.7 | 1.5e-05 | 21 | 61 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +r+C+ ++ ++ +C+ ++ lC C + H H ORGLA07G0199200.1 21 ARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAAntvstrH 61 689***************************99654455445 PP | |||||||
2 | CCT | 62.9 | 1e-21 | 339 | 379 | 3 | 43 |
CCT 3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ ORGLA07G0199200.1 339 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKS 379 5689***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.0E-11 | 19 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.741 | 19 | 66 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.16E-8 | 24 | 66 | No hit | No description |
PROSITE profile | PS51017 | 14.932 | 337 | 379 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-16 | 339 | 379 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MARDDDPAKK LAVDGGVAAA ARCCDFCGGL PAVVYCRADS ARLCLPCDRH VHAANTVSTR 60 HARAPLCSAC RSAPATAFRR GDGFLCSSCD FDERLRRGSI GSGGDELPLD DRAAVEGYTG 120 CPSIGELAAI LGVVSGDSDK PADDGWWSAS WEEEASQVLS LDDIIVPTTS CHGLRPLLTP 180 PSPENQSSPD NGELDGEVLR QLGELARSEA AAQATFVAGD QLASWASPEF TSGHGDFGIE 240 AASTTVPSCE NETWIMSTDC TDPTNASKTD IAREEAPASS SAEPCLSSLV EISEICPSMS 300 YSGSGIDNGG HDPSTLAIMP TQALPKKGVY DIAYPDRGTV ISRYKEKRKN RRFDKQIRYE 360 SRKARADGRL RIKGRFAKSN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0199200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120101 | 0.0 | AK120101.1 Oryza sativa Japonica Group cDNA clone:J013022K23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645435.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 isoform X1 | ||||
TrEMBL | I1QD00 | 0.0 | I1QD00_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0199200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3759 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 6e-49 | B-box type zinc finger protein with CCT domain |