PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0184700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 617aa    MW: 67269.3 Da    PI: 4.5563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0184700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077108126220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        kC  Cg++Fs++s+L  H+
  ORGLA07G0184700.1 108 KCWSCGQVFSSNSELCGHL 126
                        7***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-3428168No hitNo description
PfamPF127562.8E-654127IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805475IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.1505.2E-39250410IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5167875.491250579IPR025799Protein arginine N-methyltransferase
SuperFamilySSF533352.69E-63256564IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024402.05E-11291410No hitNo description
PfamPF136491.5E-11292407No hitNo description
Gene3DG3DSA:2.70.160.119.5E-41414598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006479Biological Processprotein methylation
GO:0005829Cellular Componentcytosol
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
ESTSSVPSKS GSERIGRSTR MGRRRRREGE EGWDDWESDG DDAGGGGGGG GLLCLFCSAR  60
FDSESSLFSH CASEHRFDFY RVVKETGMDF YGCIKLINFV RSKVAENKCW SCGQVFSSNS  120
ELCGHLHALE IPQLEGKVPW GDDVYLKPFL EDDSLLHSLS VFDDDDEDDC GMPMEKGGCS  180
AGNGSLAETC ESNLKSIIND GSDVIDRFER TCTIESTDGE CSGSLAQEPS DKQLKIARAS  240
AAARGIKSVD ESYFGSYSSF GIHREMLGDK VRTEAYRDAL LGNPSLMNGA TVLDVGCGTG  300
ILSLFAAKAG ASRVIAVDGS AKMVSVATEV AKSNGFLYDE NMEMQQKRDT QVITVVHTKA  360
EELNHKIQVP SNKFDVLVSE WMGYCLLYES MLSSVLYARD HFLKPGGAIL PDTATIFGAG  420
FGKGGTSLPF WENVYGFDMS CIGKEVTGNS ARFPVVDILA SEDIVTETAV LNSFDLATMK  480
ENEMDFTSSF ELRLSESGVS QSGVTWCYGI ILWFDTGFTN RFCKEKPVNL STSPFSTPTH  540
WSQTIFTFEE PIAMAKEESA VVSSASVGTD ECPAVMIRSR ISIVRASEHR SIDISIETAG  600
ISSDGRKRSW PVQIFNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nt2_A6e-662125549325Protein arginine N-methyltransferase 1
6nt2_B6e-662125549325Protein arginine N-methyltransferase 1
6nt2_C6e-662125549325Protein arginine N-methyltransferase 1
6nt2_D6e-662125549325Protein arginine N-methyltransferase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMethylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0184700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1054890.0AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647334.10.0probable protein arginine N-methyltransferase 3
SwissprotA2YP560.0ANM3_ORYSI; Probable protein arginine N-methyltransferase 3
TrEMBLI1QCK50.0I1QCK5_ORYGL; Uncharacterized protein
STRINGORGLA07G0184700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP789599