PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0175700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1026aa    MW: 114634 Da    PI: 6.6058
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0175700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
               CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++
  ORGLA07G0175700.1  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENEN 112
                        5679**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+ywlLee + +ivlvhylevk
  ORGLA07G0175700.1 113 FQRRTYWLLEEGFMNIVLVHYLEVK 137
                        **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.0316142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.5E-5430517IPR013783Immunoglobulin-like fold
PfamPF018331.5E-4431504IPR002909IPT domain
SuperFamilySSF812961.71E-16431517IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-16618724IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-17623725IPR020683Ankyrin repeat-containing domain
CDDcd002047.08E-13624722No hitNo description
PROSITE profilePS5029717.263630724IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-7636725IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055663692IPR002110Ankyrin repeat
PROSITE profilePS500889.618663695IPR002110Ankyrin repeat
SMARTSM00248670702731IPR002110Ankyrin repeat
SMARTSM000154.2836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718837866IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.1E-7838887IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0055838857IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096859881IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633860884IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4862881IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDISQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGKN NFSRVASKVS AVLKKLKRVQ DYLMLIVLHA QTLSLVRASV  180
SKEKFGATDN CRASSRYHPF VEMQQPVDGV MMNNMLGVSA PSAGYHGEMQ TTTANSDNHF  240
ATHYDIAGVF NEAGAGLRGV SKTLHDSVRF AEPYPECSAE FMEPALYSSN ATMESNNLDD  300
NSQLETFMSE ALYTNNLTQK EADALSAAGI MSSQAENNSY TDGIRYPLLK QSSLDLFKIE  360
PDGLKKFDSF SRWMSSELPE VADLDIKSSS DAFWSSTETV NVADGTSIPI NEQLDAFAVS  420
PSLSQDQLFS IIDVSPSYAC TGSRNKVLIT GTFLANKEHV ENCKWSCMFG DVEVPAEVLA  480
HGSLRCYTPV HLSGRVPFYV TCSNRVACSE VREFEFRDSD ARQMDTSDPQ TTGINEMHLH  540
IRLEKLLSLG PDDYEKYVMS DGKEKSEIIN TISSLMLDDK CLNQAVPLDE KEVSTARDQN  600
IEKLVKEKLY CWLVHKVHDE DKGPNVLGKE GQGVIHLVAA LGYDWAVRPI ITAGVKVNFR  660
DARGWTALHW AASCGRERTV GALIANGAES GLLTDPTPQF PAGRTAADLA SENGHKGIAG  720
FLAESALTSH LSALTLKESK DGNVKEICGL GGAEDFAESS SAQLAYRDSQ AESLKDSLSA  780
VRKSTQAAAR IFQAFRVESF HRKKVVEYGD DDCGLSDERT LSLVSIKNAK PGQNDGSHSA  840
AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKSY RRIVWSVGIV EKIILRWRRK  900
RRGLRGFQPV KQLEGPSPIQ QLEGPSQIQP AKEEEEDEYD YLKDGRKQAE GRLQRALARV  960
KSMTQYPEAR EQYSRIANRV TELQEPQAMM IQDDMQSDGA IADGGDFMAE LEELCGDGDA  1020
PMPTIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0175700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLI1QCB50.0I1QCB5_ORYGL; Uncharacterized protein
STRINGORGLA07G0175700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.30.0ethylene induced calmodulin binding protein