PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0170400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 719aa    MW: 81848.3 Da    PI: 7.9167
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0170400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.71.8e-145288135
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  ORGLA07G0170400.1 52 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 88
                       5667777777************************876 PP
2FAR184.12.2e-26122209191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fYn+YA +vGFsvrks+s+ks+ n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + ++k++vt+++ +HnH+lap
  ORGLA07G0170400.1 122 EFYNKYAGHVGFSVRKSTSHKSSGN-ITKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKADHNHQLAP 209
                        6********************9444.47889************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-648101IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-104899No hitNo description
Gene3DG3DSA:3.30.50.103.9E-115190IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.74E-85189No hitNo description
PfamPF003201.3E-115287IPR000679Zinc finger, GATA-type
PfamPF031018.7E-24122209IPR004330FAR1 DNA binding domain
PfamPF105515.0E-25332426IPR018289MULE transposase domain
PROSITE profilePS509669.755600647IPR007527Zinc finger, SWIM-type
PfamPF044345.2E-5618646IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-6622649IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MMHMLVAPDG GGGGEMPPPY GGAAAAAPPP MEQELELHRD NADDGLDGHV RCLRCGISGN  60
ATPHMRRGPD GPRTLCNACG IAYRKGKMRR MIEAEPPIDE AALAKLVPEV GMEFESEDKA  120
YEFYNKYAGH VGFSVRKSTS HKSSGNITKV RTFVCSREGY NRDKKSLEAK KPRLDTRIGC  180
PARLIIKVTP ESKYRVTDFK ADHNHQLAPP STMHMLRSQR ILTELQSGEA ELSDDSVMTP  240
TTKATGDLVV RQIGFLRSIS LLPADYKNYL RSKRMKAMQL GDGGAILKYL QTMQMENPAF  300
FYTMQIDEDD KLTNFFWADP KSREDFNYFG DVLCLDTTYK INGYGRPLSL FLGVNHHKQT  360
IIFGAAMLYD ESFESYRWLF ESFKIAMHGK QPAVALVDQS IPLASAMAAA WPNTTQRTCA  420
WHVYQNSLKH LNHVFQGSKT FAKDFSRCVF GYEEEEEFLF AWRSMLEKYD LRHNEWLSKL  480
FDERERWALA YERHIFCADI ISALQAESFS SVLKKFLGPQ LDLLSFFKHY ERAVDEHRYA  540
ELQADFQASQ SYPRIPPAKM LKQAAHTYTP VVFEIFRKEF ELFMDSVLFS CGEAGTTSEY  600
KVAPSEKPKE HFVRFDSSDC SCICTCRKFE FMGIPCCHML KVLDYRNIKE LPQRYLLKRW  660
RRTAKSANEE NQGYVANGNG SSLNSIVPPA NHHGLQGFSA MIQDTPVSNM HENSFRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0170400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663170.0AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647352.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLI1QC620.0I1QC62_ORYGL; Uncharacterized protein
STRINGORGLA07G0170400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5