PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0165600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 225aa MW: 23343.8 Da PI: 7.0775 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 184.4 | 8.6e-58 | 21 | 116 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 reqdrflPianvsrimk++lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy++plk+yl+k+rel ORGLA07G0165600.1 21 REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFREL 112 89****************************************************************************************** PP NF-YB 94 egek 97 egek ORGLA07G0165600.1 113 EGEK 116 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-53 | 18 | 120 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.3E-40 | 23 | 122 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-27 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.0E-20 | 54 | 72 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 57 | 73 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.0E-20 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 7.0E-20 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPESDNESGG PSNAGEYASA REQDRFLPIA NVSRIMKRAL PANAKISKDA KETVQECVSE 60 FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYID PLKLYLHKFR ELEGEKAIGA 120 AGSGGGGAAS SGGSGSGSGS HHHQDASRNN GGYGMYGGGG GGMIMMMGQP MYGSPPASSA 180 GYAQPPPPHH HHHQMVMGGK GAYGHGGGGG GGPSPSSGYG RQDRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-51 | 15 | 111 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0165600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288037 | 0.0 | AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK111621 | 0.0 | AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence. | |||
GenBank | AK112118 | 0.0 | AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence. | |||
GenBank | AP005193 | 0.0 | AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06. | |||
GenBank | AP006458 | 0.0 | AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645521.1 | 1e-101 | nuclear transcription factor Y subunit B-10 | ||||
Swissprot | Q69J40 | 1e-102 | NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | I1QC14 | 1e-162 | I1QC14_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0165600.1 | 1e-163 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-70 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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