PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0163600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 323aa    MW: 34263.9 Da    PI: 5.4093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0163600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013110132123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F ++   + H+r+H
  ORGLA07G0163600.1 110 FPCHLCHKEFGSRKAVHGHMRVH 132
                        89********************6 PP
2zf-C2H211.60.00085216238123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk +++   L  H r+H
  ORGLA07G0163600.1 216 HPCNVCGKEYPTGVALGGHKRKH 238
                        78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-5107136No hitNo description
SMARTSM003550.046110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219110137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4110135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.007110134IPR007087Zinc finger, C2H2
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4168171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.42170194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4172194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.48E-5213241No hitNo description
PROSITE profilePS501578.974216243IPR007087Zinc finger, C2H2
SMARTSM003550.25216238IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-10216240IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGKSSSRHA DPLEEVEMNS ASETEDDDDC RYVIQSRRDN DNDDEEGMRP ATACKRRRRL  60
DDILALLPSP PTLSTSSGSE GTISDRDHGG DVIRAGDDAD PVAARQEASF PCHLCHKEFG  120
SRKAVHGHMR VHHAENEKEP LPPPPPPAAM PVLPQARLPA PGASRSGGPY KCKYEGCNME  180
YKTHQGLGGH VAGHINRDKM ATASGSGGAG KPEGKHPCNV CGKEYPTGVA LGGHKRKHYR  240
KDLDLTLSLA PPGELAAPPT PAPAPAAIAA VEAEAEVAED GDGGEPVPTT LSTGARRNVV  300
VRIWGVDVEK PVDDVEEQDG GSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459KRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0163600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.11e-167zinc finger protein squeeze-like
TrEMBLA0A0D3GT700.0A0A0D3GT70_9ORYZ; Uncharacterized protein
TrEMBLA2YNF20.0A2YNF2_ORYSI; Uncharacterized protein
TrEMBLI1QBZ40.0I1QBZ4_ORYGL; Uncharacterized protein
STRINGORGLA07G0163600.10.0(Oryza glaberrima)
STRINGOBART07G21220.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.13e-12C2H2 family protein