PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0157400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 226aa    MW: 24398 Da    PI: 7.0463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0157400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011143165123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C   F++   L  H+r+H
  ORGLA07G0157400.1 143 HKCSICRLEFPSGQALGGHMRVH 165
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-895165No hitNo description
PfamPF139129.4E-996120IPR007087Zinc finger, C2H2
SMARTSM003550.8997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.66397119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621143165IPR007087Zinc finger, C2H2
SMARTSM003550.025143165IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-9143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGLNEKPLVP PLSPTPVDFR AHQVFPSKHH DFDTSKSRNI SGSVAIGSDS EEEYLATSLL  60
MLAHGIRDET KDIRGMGDVK GVGVDTLELV KPSQRAYECS VCGKVYWCYQ ALGGHMTCHR  120
NLFAQVVAGD ELSSDGTMVV KGHKCSICRL EFPSGQALGG HMRVHYVGGV EAGSVKEKNV  180
VKTKVTGALK LVLKDFDLNV PVVATMVGDE AESSHSEAKA RMMTLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0157400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3952940.0AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-166zinc finger protein AZF3
TrEMBLI1QBT21e-166I1QBT2_ORYGL; Uncharacterized protein
STRINGORGLA07G0157400.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-24C2H2 family protein