PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0128800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 359aa MW: 34290 Da PI: 8.0653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0128800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	46	105	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ ORGLA07G0128800.1 46 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 105 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	42	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	48	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAGAGGAATA AAGGGGGGGV AAGRSGGGGG GGAAAAAGAG APDPRAEALR CPRCDSANTK 60 FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRSRSGGAA PGGGVGRGGP 120 GGGAAAAVSS AGGGAAGTSP ASSLALPQPG SLPSLSSALG LTGGTSLASL LLGSSGSGGD 180 HLGLFQAMQS VVSDAAAFEM HQQHQSQVDH LLGLGYGAAG AQIQAAKPWL HDGGATGGLL 240 DGFYAPLLSG SIVPGLEELQ VKAEATTGDH QQKSSAAAAG EQSWDLPTPS SSNVEASIIA 300 SDALMAAAAA SMNPAVSAAA ASTAPSAQSL LYWGNGGIGA AAAAWPDLAN CGSSIATLF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAGAGGAATA AAGGGGGGGV AAGRSGGGGG GGAAAAAGAG APDPRAEALR CPRCDSANTK  60
FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRSRSGGAA PGGGVGRGGP  120
GGGAAAAVSS AGGGAAGTSP ASSLALPQPG SLPSLSSALG LTGGTSLASL LLGSSGSGGD  180
HLGLFQAMQS VVSDAAAFEM HQQHQSQVDH LLGLGYGAAG AQIQAAKPWL HDGGATGGLL  240
DGFYAPLLSG SIVPGLEELQ VKAEATTGDH QQKSSAAAAG EQSWDLPTPS SSNVEASIIA  300
SDALMAAAAA SMNPAVSAAA ASTAPSAQSL LYWGNGGIGA AAAAWPDLAN CGSSIATLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0128800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003815	0.0	AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647864.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	I1QAZ6	0.0	I1QAZ6_ORYGL; Uncharacterized protein
STRING	ORGLA07G0128800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	8e-34	TARGET OF MONOPTEROS 6