PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0124200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 402aa    MW: 41722 Da    PI: 6.6674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0124200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+lv+++ ++G  +W++++++ g+ R++k+c++rw +yl
  ORGLA07G0124200.1 13 RGLWSPEEDEKLVRYISEHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 60
                       788*******************************************97 PP
2Myb_DNA-binding50.54.9e-1666109146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  ORGLA07G0124200.1  66 RGTFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-27463IPR009057Homeodomain-like
PROSITE profilePS5129419.005860IPR017930Myb domain
SuperFamilySSF466891.24E-2810107IPR009057Homeodomain-like
SMARTSM007171.9E-141262IPR001005SANT/Myb domain
PfamPF002491.1E-161360IPR001005SANT/Myb domain
CDDcd001677.84E-131660No hitNo description
PROSITE profilePS5129425.59761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2464116IPR009057Homeodomain-like
SMARTSM007171.4E-1565113IPR001005SANT/Myb domain
PfamPF002498.6E-1566109IPR001005SANT/Myb domain
CDDcd001671.37E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKTLLHGGGG GGGGAANPSG NGLAQFQSNN GAAAAGTTPF TISSPAKAAA  180
YDVAPPAIPP ALYDVVLPAN PAGGMLMAHD HHQAAVAAPV GYPYADHGGN GGGVLMSFRD  240
QNAGVHGAAS MDFMNGSSSS SSMEQLGGGG GMSSNGNGGF NASMAAFMDE EAAMWATAVE  300
PPGSMGGLAV MDQVAQQQQQ QVLVQDAAVG VAPTTLMMHG GGAATAGAMV VDKSVEMVDV  360
SSAVYGGATA TAFDLDLMVE SCGMFCGGGG AGNAMEQLQW DC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-34131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0124200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040060.0AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645809.10.0myb-related protein Hv33
TrEMBLA0A0D3GR970.0A0A0D3GR97_9ORYZ; Uncharacterized protein
TrEMBLI1QAV00.0I1QAV0_ORYGL; Uncharacterized protein
STRINGORGLA07G0124200.10.0(Oryza glaberrima)
STRINGOBART07G15150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67