PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0123600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 207aa    MW: 21595.5 Da    PI: 9.9989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0123600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.21.1e-12111434127
                NAM   4 Gfr..FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyatgkr.knratksgy.. 82 
                        Gfr  F P+d++l+++ L++k+++ +   +++  +++v d + + P +L +       +++ + wyfFs r ++ a +kr ++ra+  g   
  ORGLA07G0123600.1  11 GFRipFLPSDSDLLDCLLRPKIASGRvdPRFAPLVHDVaDAFALPPAQLAAahapaPGAGGAEAWYFFSVRPRARAGSKRaASRAVGGGGgk 102
                        6665599****************9995433334599999**********843454422236779********99997666156677644233 PP

                NAM  83 .WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         W + g +k+v        g  + + + + +a   +  +W+m ey 
  ORGLA07G0123600.1 103 rWCSMGAKKAVEG-----GGYCQRFRYKERTAAGVVAPRWMMVEYG 143
                        5******999977.....57889999998888888999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.22710173IPR003441NAC domain
PfamPF023652.7E-912143IPR003441NAC domain
SuperFamilySSF1019412.62E-2315173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPLADPAAE GFRIPFLPSD SDLLDCLLRP KIASGRVDPR FAPLVHDVAD AFALPPAQLA  60
AAHAPAPGAG GAEAWYFFSV RPRARAGSKR AASRAVGGGG GKRWCSMGAK KAVEGGGYCQ  120
RFRYKERTAA GVVAPRWMMV EYGVAQEHDG EGVAQEHGGK GVAELVLCKI FRSPEPSRRS  180
ESGSPSSSSS ASASPSCSGG RKRKAAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0123600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.16e-55PREDICTED: NAC domain-containing protein 72-like
TrEMBLI1QAU41e-144I1QAU4_ORYGL; Uncharacterized protein
STRINGORGLA07G0123600.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017