PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0099100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 103aa    MW: 10762.7 Da    PI: 7.7424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0099100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-051739123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H++ H
  ORGLA07G0099100.1 17 YECTFCKRGFTNAQALGGHMNIH 39
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-71543No hitNo description
PfamPF139129.6E-61641IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-51743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00971739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4891744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDGEGAPARR APAASYYECT FCKRGFTNAQ ALGGHMNIHR KDRSAGGKSQ GGGQHHEGGG  60
SGSGGGGGQQ HGRDVHLGLT LGRNEEERDG VDLELRLGHA HYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552GGKSQGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0099100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-174CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646403.12e-68zinc finger protein STAMENLESS 1-like
TrEMBLA0A0E0HZH56e-67A0A0E0HZH5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q7726e-67A0A0E0Q772_ORYRU; Uncharacterized protein
TrEMBLA2YKK66e-67A2YKK6_ORYSI; Uncharacterized protein
TrEMBLI1QA496e-67I1QA49_ORYGL; Uncharacterized protein
TrEMBLQ8GVI86e-67Q8GVI8_ORYSJ; Os07g0417400 protein
STRINGORUFI07G11810.19e-68(Oryza rufipogon)
STRINGOS07T0417400-009e-68(Oryza sativa)
STRINGONIVA07G09630.19e-68(Oryza nivara)
STRINGONIVA07G09640.19e-68(Oryza nivara)
STRINGORGLA07G0099100.19e-68(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein