PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0072500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 375aa    MW: 40527.8 Da    PI: 4.083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0072500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.38.7e-2591491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG+rF+P+d+elv +yL ++++g++l+l+ v+ ++d ++++Pw+L + +  + +e +f ++++ k+a+gkr++r +   g+W+ +     
  ORGLA07G0072500.1   9 LPPGLRFDPSDDELVGRYLLRRLQGQPLPLDGVVLDADPLSAQPWRLLADHGRGGDEAFFLAEAHAKNAKGKRQKRtVEGGGFWQGQRMcvd 100
                        79****************************999**************877777889********************555599**97655332 PP

                NAM  89 dkevlsk..kgel...........vglkktLvfykgrapkgektdWvmheyrl 128
                         k++l+   +  +            + k +L f+ ++ ++g ++ Wvmhey++
  ORGLA07G0072500.1 101 GKKLLVPgdD--DggggggevleiAWRKYVLSFF-AEGERG-SSGWVMHEYSV 149
                        3444444550..245556667887899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-313168IPR003441NAC domain
PROSITE profilePS5100528.4919168IPR003441NAC domain
PfamPF023656.2E-1610149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAAAGADGLP PGLRFDPSDD ELVGRYLLRR LQGQPLPLDG VVLDADPLSA QPWRLLADHG  60
RGGDEAFFLA EAHAKNAKGK RQKRTVEGGG FWQGQRMCVD GKKLLVPGDD DGGGGGGEVL  120
EIAWRKYVLS FFAEGERGSS GWVMHEYSVT APADLASSPL RLYRIRFSGY GKKRKREPED  180
DGRAHGAPRW AEAETALFDL EVGPPPPPLL VPPPAAAAAD HGTDQSSSGV TDMVFRDLPD  240
LIADAGAALP DQNQQDWSEV ADQSSFCVMG DDSSLLLPDL PGMIDDNEHQ QFVREFDMPH  300
LFVPQAEEAI AGGGAASAPS ADNQNCEFND GEDMALSDFE FPESIDEVLS YIDFSTSDTS  360
CRDFTMDELF DLPVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-12814914140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0072500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037540.0AP003754.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1341_A08.
GenBankAP0043820.0AP004382.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0418E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.10.0NAC transcription factor 32
TrEMBLI1Q9D30.0I1Q9D3_ORYGL; Uncharacterized protein
STRINGORGLA07G0072500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137