PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0053500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 678aa    MW: 71385.3 Da    PI: 3.7733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0053500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.19.8e-2591431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ ++ +fF++++ k+ +g+r++r +   gyW+ +     
  ORGLA07G0053500.1   9 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HSRGDDAFFFAEARAKNGKGSRQKRtVEGGGYWQGQRMcvd 99 
                        79****************************99***************743.4567899******************555599**97765443 PP

                NAM  89 .dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ v          + e  + k +L ++ ++ +kg ++ Wvmhey++
  ORGLA07G0053500.1 100 gERLV--VpdgggggGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 143
                        23333..2357776333346677778888.556665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-324162IPR003441NAC domain
PROSITE profilePS5100528.8879162IPR003441NAC domain
PfamPF023652.9E-1510142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAAAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHS  60
RGDDAFFFAE ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGG GGGVEIAWRK  120
YVLSYFADGE KGSSGWVMHE YAITSPADLA SSAMRLYRIR FSGHGKKRKR EPDSQSAHDE  180
HGRARCAPQI AMPETALPED SAPPPQPVHP PAAVVDCVCD VTDQGSSLVF PDQPGSIYED  240
ELQSFVPEFA ARNLFVSLPE GSRDVVAEAA LIEDLALSPQ PVPPPAEVVN QADDSDGADQ  300
GCSSVFAALP DLIVLPPEEA CGSGGAAPAP SWASSLDNQN DDAPAFFEFP ESMDDMVGCF  360
DFASMDNQSC TSAVSEIAVL EEPFLPPPTM VNHDNNSDSD GADQSCFGVG DNSTLVFSDL  420
TGSIDEDELQ SFVPEFVSLP QGSCEADAEA DSGGGVAPAQ FAEFGGPESM DDPLNFPAEA  480
SGGGDRAAPA SSWVSSQDNQ NDEAPMFFEL PESLDDMVGC FDFAAMDGQS CTSAVSGTAL  540
IEELVLPPAA MVNHHDDSVS DIADHGCSGA VPPPNSEVVD LPNDSVGADQ SCSGMVDDSL  600
SGYYEAELKD ASGGAGSMMS SPDKQKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD  660
DLSCIDFTID DELFDLWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0052570.0AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1Q8U30.0I1Q8U3_ORYGL; Uncharacterized protein
STRINGORGLA07G0053500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-14NAC domain containing protein 47