PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0030900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 359aa    MW: 37780 Da    PI: 8.8067
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0030900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.91.8e-29197251358
          CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        p+YVNaKQ+++I++RR +Rak+e+e+++ ++srkpylheSRh+hA+rR+RgsgGrF
  ORGLA07G0030900.1 197 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 251
                        9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-32193254IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.417194254IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22197219IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-30197251IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860199219IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-22228251IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
FLQAALSFQD HGHGLQAITG RGGNGGAAAH ALPWWAGAGA GAGSQTLLGT GGGEESFCQL  60
SNTIMEDTRI LQNHHHQILA AGRQLQQRHH FPAMPPERHH HPPPPAPGSP AMKFPIISGD  120
SDLGKDLKFH ESSAPTIAAY SPLQEYQGHF ELALGHSMVF TNFCNSEQSY GVYSPYGAQT  180
MAGRMLLPPA IATDVGPIYV NAKQFNGIIR RRLARAKAER EHRVSRSRKP YLHESRHRHA  240
MRRARGSGGR FLNTKNASSA AAAAADAAPV SSGGGDHGAS NKSSSASEAT RVYDDDDDMG  300
AGGGGDGGDF HHAMGHLRSP AFFPSLAAMM DGGGGGGGGE GKWATATPHH GCRVDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-17196253361HAPB protein
4g92_A1e-17196253361HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235244RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0030900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054540.0AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.10.0nuclear transcription factor Y subunit A-2
TrEMBLI1Q8670.0I1Q867_ORYGL; Uncharacterized protein
STRINGORGLA07G0030900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-26nuclear factor Y, subunit A10