PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0021200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 495aa    MW: 51482.4 Da    PI: 4.5282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0021200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08378404227
                        -S---SGGGGTS.--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                        kt+lC  ++  G  C++G++Ck+aHg+
  ORGLA07G0021200.1 378 KTKLCAEYYSRGlGCPRGNTCKYAHGE 404
                        7999988888888************96 PP
2zf-CCCH26.31.2e-08439465127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC++f  +G C + ++C+FaHg+
  ORGLA07G0021200.1 439 YKTKLCKTFTSGGLCLFAANCRFAHGE 465
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6375409IPR000571Zinc finger, CCCH-type
SMARTSM003560.018376404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479376405IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6378404IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-10378408IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-12437468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202438466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8438468IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6438465IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5439465IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934468495IPR000571Zinc finger, CCCH-type
SMARTSM003560.19469495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5470494IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGH DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEHYIDDGP LVPSSGGQEE EGSGGRHVFV  180
PGGHDGEEDH PDDLVADLDL DLLVDGVVGP VPGGQLNADA PAFVPTTRGR QDLYSALSSS  240
APAAGYRYRH YITSSALAEA GHVSPFLGLP YATAFDSPLD RELVGPSSAP PPCSAASRAW  300
LVRCSSPLSD SEWTRRSILA REAAHTPAST VTGRGRFEFV PIPGAPYAPP PSFAPIAAGA  360
GPAARPLQQL AFGLEEHKTK LCAEYYSRGL GCPRGNTCKY AHGEDDLRLV VAVSSLADAG  420
EDSSSSDSSS PALGGGDKYK TKLCKTFTSG GLCLFAANCR FAHGEVELGK KEPCWYFFTG  480
QTCPRGDTCG FRHSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0021200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLI1Q7X00.0I1Q7X0_ORYGL; Uncharacterized protein
STRINGORGLA07G0021200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-09C3H family protein