PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0286200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 506aa MW: 54366.1 Da PI: 7.9196 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.5e-18 | 221 | 270 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq ORGLA06G0286200.1 221 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 270 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-19 | 216 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-24 | 217 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-16 | 217 | 274 | No hit | No description |
PROSITE profile | PS50888 | 16.952 | 219 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-15 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 225 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP 60 APPPTSQLQQ QQQQAFPGGI GTFSISHVAG ARPVAAAVVK AEPTPFVLWG QPAAAAAAHP 120 VAALGHHHHH HQQWTLPFAG VGQVAATAAR QQQERKGRVG GGGFMDSGSR SSGGAGFDDD 180 DGVAARREVS SSLKAELTVR VDGKGGSCSG SGTDQRPSSP RSKHSATEQR RRSKINDRFQ 240 ILRELLPHSD QKRDKATFLL EVIEYIRFLQ EKVQKFEASV PEWNQENAKI LPWSNIYFRS 300 FWKNSQSKGQ NPGDDLPDPS QFIRNGSSSG YNFTGKPDDN HNMVTSAAAS GAQELVETDH 360 AASVSYRSAE TPTNITNNVT SRAQAQWASP AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ 420 YSQQLLGTLT HALESSGVDL SQASISVQIN LGKRAVKRPG ADGSSSSKEL PSTSANNENM 480 GHQLTMLGGG TEELPYPTKR HKSGNS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0286200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | I1Q6U9 | 0.0 | I1Q6U9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0286200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA09G0105800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-53 | BES1-interacting Myc-like protein 2 |