PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0247800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 480aa    MW: 53737.9 Da    PI: 8.8279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0247800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-211671156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       r++ +++t+ q+++Le++F+++++p++++r++L+++lgL+ rq+k+WFqNrR+++k
  ORGLA06G0247800.1 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMK 71
                       688899***********************************************998 PP
2START110.52.6e-352073992169
                        HHHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
              START   2 laeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla 77 
                        +a +a++el+++a+a++  W+ks+          e +n d++ ++f++ ++       ++e +r+sg+v m ++ l   ++d++ +W e ++
  ORGLA06G0247800.1 207 MATRAMDELIRLAQAGDHIWSKSPgggvsggdarETLNVDTYDSIFSKPGGsyrapsINVEGSRESGLVLMSAVALADVFMDTN-KWMEFFP 297
                        5789*****************************999**********887779****99****************9999999999.******* PP

                        ....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
              START  78 ....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                            ka t++v+ +g     + l lm+ el  ++p+vp R++ fvRy+rq ++g w+i+dvSvd +++    ++  R+++lpSg+li +++n
  ORGLA06G0247800.1 298 sivsKAHTIDVLVNGmggrsESLILMYEELHIMTPAVPtREVNFVRYCRQIEQGLWAIADVSVDLQRDAHFGAPPPRSRRLPSGCLIADMAN 389
                        ********************************************************************98899******************* PP

                        CEEEEEEEE- CS
              START 160 ghskvtwveh 169
                        g+skv  +++
  ORGLA06G0247800.1 390 GYSKVYAMDN 399
                        *****88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-221078IPR009057Homeodomain-like
PROSITE profilePS5007118.2041373IPR001356Homeobox domain
SMARTSM003894.8E-201477IPR001356Homeobox domain
CDDcd000864.60E-201574No hitNo description
PfamPF000461.1E-181671IPR001356Homeobox domain
PRINTSPR000318.8E-54453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000318.8E-55369IPR000047Helix-turn-helix motif
PROSITE profilePS5084830.215197394IPR002913START domain
SuperFamilySSF559612.88E-22198399No hitNo description
CDDcd088751.32E-88201400No hitNo description
SMARTSM002342.6E-16206427IPR002913START domain
PfamPF018523.9E-28207399IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAIREAL KNVICPTCGG PPVGEDYFDE  120
QKLRMENARL KEELDRVSNL TSKYLGRPFT QLPPATPPMT VSSLDLSVGG MGGPSLDLDL  180
LSGGSSGIPF QLPAPVSDME RPMMAEMATR AMDELIRLAQ AGDHIWSKSP GGGVSGGDAR  240
ETLNVDTYDS IFSKPGGSYR APSINVEGSR ESGLVLMSAV ALADVFMDTN KWMEFFPSIV  300
SKAHTIDVLV NGMGGRSESL ILMYEELHIM TPAVPTREVN FVRYCRQIEQ GLWAIADVSV  360
DLQRDAHFGA PPPRSRRLPS GCLIADMANG YSKVYAMDNV PHAMVFWFRL ADDVAHARVH  420
AGDLGRTHGG GGEEPDQRAV PXPRAERRRV RGAPLARRAP ARVRALRLPR RARRPAPYRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0247800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLI1Q5R50.0I1Q5R5_ORYGL; Uncharacterized protein
STRINGORGLA06G0247800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-129homeodomain GLABROUS 11