PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0241700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 434aa    MW: 47677.5 Da    PI: 7.0776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0241700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011114135223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C+ C+k+F++  ++  H+r+H
  ORGLA06G0241700.1 114 ECQVCHKRFKNDKSMFGHLRSH 135
                        6*******************99 PP
2zf-C2H211.50.0009287309123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C++C++ Fs++  L  H+  H
  ORGLA06G0241700.1 287 YMCKHCNEEFSTHQALGGHMAGH 309
                        89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.096113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037113140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7114135No hitNo description
PfamPF139123.1E-4114135IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7282309No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4286313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081287310IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-7287312IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596287314IPR007087Zinc finger, C2H2
PROSITE patternPS000280289310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGGSA GDVECQVCHK  120
RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV  180
GDSNSSMPTP GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE  240
GAEGSSRAIV GDEHEHEARR RKKGKRKLKE PREEERKVKK EKKRHPYMCK HCNEEFSTHQ  300
ALGGHMAGHH KEKRILLKEK QRERSLVLEK EPERSHHLME EKHPERGLIL EKKQLERSSI  360
VLKEKQPDKN LILEEEQPEV VYQDKIDQTM NWQKTERNEG ASYLGGGSNT APIAQEDSRP  420
PFGFDLNVEA PEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260267RKKGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0241700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.10.0uncharacterized protein LOC107278701
TrEMBLI1Q5K40.0I1Q5K4_ORYGL; Uncharacterized protein
STRINGORGLA06G0111100.10.0(Oryza glaberrima)
STRINGORGLA06G0241700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028