PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0239600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 250aa    MW: 25882.9 Da    PI: 5.5502
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0239600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.22.7e-4929123195
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+  lGf+dyv pl++yl++ re
  ORGLA06G0239600.1  29 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRTRE 120
                        69****************************************************************************************** PP

              NF-YB  93 leg 95 
                         eg
  ORGLA06G0239600.1 121 YEG 123
                        997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-4527123IPR009072Histone-fold
SuperFamilySSF471134.81E-3632129IPR009072Histone-fold
PfamPF008082.6E-243699IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.2E-136381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.2E-1382100No hitNo description
PRINTSPR006159.2E-13101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEPAFPNGGA AAPPPPMAAE QPAAAAAVVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK  60
EVIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD RLGFDDYVPP LTAYLRRTRE  120
YEGGGSGGGG GGGRGAAAAP AVVPPPPPPP PEDAFRYVQV HHPVYAAPGE PVQGYGYPVA  180
MSSALPAPHV HVGVRGGGQH EVFGGGPAPL AVYYGGALYG EASSRGGCSA ADEGSSSSSA  240
SPAPVGPNYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-5229120697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0239600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880350.0AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds.
GenBankAK1096600.0AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence.
GenBankAP0047910.0AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642670.11e-172nuclear transcription factor Y subunit B-10-like
TrEMBLI1Q5I31e-176I1Q5I3_ORYGL; Uncharacterized protein
STRINGORGLA06G0103100.11e-177(Oryza glaberrima)
STRINGORGLA06G0239600.11e-177(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-52nuclear factor Y, subunit B6