PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0237500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 20250.6 Da PI: 7.3771 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H ORGLA06G0237500.1 56 YPCPLCDRHFPTEKAVHGHMRSH 78 99********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.15E-6 | 55 | 130 | No hit | No description |
Pfam | PF13912 | 5.7E-6 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.055 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0013 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-8 | 107 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.4 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGQVFVHHL GGGSGGDDPT HPWLSLKSSH EMDDAVASWR EKLADMAAAD ERAGRYPCPL 60 CDRHFPTEKA VHGHMRSHPG RGWRGMEPPR EPSPGDLALA ADGKRYRYVC DRCKAPFETR 120 QALGGHRASH STKKGCSWHA KQLAMAKPPK NDFDLNHLSL EAIQAAAQEE QAAQEGNKDE 180 EPKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0237500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108097 | 0.0 | AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence. | |||
GenBank | AP004685 | 0.0 | AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642837.1 | 1e-135 | zinc finger protein ZAT2 | ||||
TrEMBL | A0A0D3GL19 | 1e-134 | A0A0D3GL19_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q2V4 | 1e-134 | A0A0E0Q2V4_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1Q5G2 | 1e-134 | I1Q5G2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5Z7P5 | 1e-134 | Q5Z7P5_ORYSJ; Os06g0727000 protein | ||||
STRING | ORUFI06G29970.1 | 1e-134 | (Oryza rufipogon) | ||||
STRING | OS06T0727000-01 | 1e-134 | (Oryza sativa) | ||||
STRING | ORGLA06G0237500.1 | 1e-134 | (Oryza glaberrima) | ||||
STRING | OBART06G28040.1 | 1e-134 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 5e-15 | C2H2-like zinc finger protein |