PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0222600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 482aa MW: 52566.4 Da PI: 5.7324

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0222600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	269	323	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl ORGLA06G0222600.1 269 KARLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 323 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.393	266	326	IPR017930	Myb domain
SuperFamily	SSF46689	7.88E-17	267	323	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-30	267	324	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	269	324	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-8	271	322	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-22	359	404	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MSSQSVVAVK QIAAPDKIVE TCPSTKHSVH KLFDVKPDFQ GLMDDNLSSS SQSSSIKIEL 60 IRSSSLPNIL PFQKRSSEPE PESPLSHVSH PNVSEPVYSN SSTFCASLFS SSSMETEPCR 120 QLGTLPFLPH PPKCEQQVSA GHSSCSSLLV PGGDGDIGNA HDEPEQSDDL KDFLNLSGGD 180 ASDGSFHGEN NAMAFAEQME FQFLSEQLGI AITDNEESPR LDDIYGTPPQ LSSLPVSSCS 240 NQSVQKAGSP VKVQLSSPRS SSGSATTNKA RLRWTLELHE RFVEAVNKLD GPEKATPKGV 300 LKLMKVEGLT IYHVKSHLQK YRLAKYLPET KEDKKASSED KKSQSGSSGN DSVKKKNLQV 360 AEALRMQMEV QKQLHEQLEV QRQLQLRIEE HARYLQRILE EQHKVSISSN SLSLKPPAES 420 QPESPKPTSE KKEAESEAGA ATSAQPSSED KSPDAECKSS PPVGSKRARV HVGDEDDEHQ 480 CS

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MSSQSVVAVK QIAAPDKIVE TCPSTKHSVH KLFDVKPDFQ GLMDDNLSSS SQSSSIKIEL  60
IRSSSLPNIL PFQKRSSEPE PESPLSHVSH PNVSEPVYSN SSTFCASLFS SSSMETEPCR  120
QLGTLPFLPH PPKCEQQVSA GHSSCSSLLV PGGDGDIGNA HDEPEQSDDL KDFLNLSGGD  180
ASDGSFHGEN NAMAFAEQME FQFLSEQLGI AITDNEESPR LDDIYGTPPQ LSSLPVSSCS  240
NQSVQKAGSP VKVQLSSPRS SSGSATTNKA RLRWTLELHE RFVEAVNKLD GPEKATPKGV  300
LKLMKVEGLT IYHVKSHLQK YRLAKYLPET KEDKKASSED KKSQSGSSGN DSVKKKNLQV  360
AEALRMQMEV QKQLHEQLEV QRQLQLRIEE HARYLQRILE EQHKVSISSN SLSLKPPAES  420
QPESPKPTSE KKEAESEAGA ATSAQPSSED KSPDAECKSS PPVGSKRARV HVGDEDDEHQ  480
CS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0222600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060648	0.0	AK060648.1 Oryza sativa Japonica Group cDNA clone:001-027-G12, full insert sequence.
GenBank	AK067950	0.0	AK067950.1 Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644151.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-166	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	I1Q513	0.0	I1Q513_ORYGL; Uncharacterized protein
STRING	ORGLA06G0222600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	7e-68	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]