PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0219100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 292aa    MW: 31494.8 Da    PI: 4.6816
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0219100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.1e-16209245135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  ORGLA06G0219100.1 209 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 245
                        ****977777***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-1172107IPR010399Tify domain
PROSITE profilePS5132014.97572107IPR010399Tify domain
PfamPF062003.1E-1375106IPR010399Tify domain
PROSITE profilePS5101713.404134176IPR010402CCT domain
PfamPF062036.2E-16134176IPR010402CCT domain
SMARTSM004011.5E-11203256IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091203251IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13207266No hitNo description
CDDcd002022.56E-14208258No hitNo description
Gene3DG3DSA:3.30.50.108.9E-16208250IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.6E-14209244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MARFEEEHRA LGAEEEDEEE DELEEEEEEM EEDEDAQHHE GVGGEVAVPM DAEAAAQLDP  60
HGGMLAASGA VQPMASNQLT LSFQGEVYVF DSVSPDKVQA VLLLLGGREL NPGLGSGASS  120
SAPYSKQRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG  180
DEATSELTAS DGSPNWGSVE GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW  240
ANKGMLRDLS KAPPTPIQVV ASVNDGNGSA AAPTTEQEIP APATANGHES ST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0219100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882282.10.0GATA transcription factor 20
SwissprotQ5Z4U50.0GAT20_ORYSJ; GATA transcription factor 20
TrEMBLI1Q4X80.0I1Q4X8_ORYGL; Uncharacterized protein
STRINGORGLA06G0219100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-76ZIM-LIKE 2