PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0205600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 18416.3 Da PI: 9.8663 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 14 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhP+d+elv +yL++k+ + v+ +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nra ORGLA06G0205600.1 14 LPPGFRFHPRDDELVLDYLERKLLDGGvggA---AaaaaavtiygcpVMVDVDLNKCEPWDLPEIACVGGKEWYFYSLRDRKYATGQRTNRA 102 79*********************99996651...23445667788878***************7666689********************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatgkd+++ + kg lvg++ktLvfykgrapkg+kt+Wvmhe+r ORGLA06G0205600.1 103 TESGYWKATGKDRPISR-KGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRK 152 ***************99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-54 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.53 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-26 | 15 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSGMNSLSMV EARLPPGFRF HPRDDELVLD YLERKLLDGG VGGAAAAAAA VTIYGCPVMV 60 DVDLNKCEPW DLPEIACVGG KEWYFYSLRD RKYATGQRTN RATESGYWKA TGKDRPISRK 120 GLLVGMRKTL VFYKGRAPKG KKTEWVMHEF RKEGQGDPMK LPLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-48 | 10 | 151 | 11 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0205600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063648 | 0.0 | AK063648.1 Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881778.1 | 1e-119 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-70 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0GD24 | 1e-118 | A0A0E0GD24_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q653V8 | 1e-118 | Q653V8_ORYSJ; Os06g0675600 protein | ||||
STRING | OS06T0675600-01 | 1e-119 | (Oryza sativa) | ||||
STRING | ONIVA02G35380.1 | 1e-119 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 6e-73 | NAC family protein |