PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0204000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 345aa    MW: 36507.3 Da    PI: 7.1656
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0204000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-1381125147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  ORGLA06G0204000.1  81 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 125
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-1675131IPR009057Homeodomain-like
PROSITE profilePS5129414.62876130IPR017930Myb domain
TIGRFAMsTIGR015571.3E-1879128IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.4E-680121IPR009057Homeodomain-like
SMARTSM007172.7E-1080128IPR001005SANT/Myb domain
PfamPF002491.3E-1081125IPR001005SANT/Myb domain
CDDcd001679.00E-883126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVSMSTTPNP IDASVVSAAA AVAGGGGGGD GGGGGGGKEK EKQVVAAPLQ PPMAVPAPAA  60
AAAMGEEARK VRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAYV GSKTVIQIRS  120
HAQKYFLKVQ KNGTGEHLPP PRPKRKAAHP YPQKASKNAC AVSPAAISQP PPLGEQGCVM  180
SMDTSPVIRN TNPSAVVPSW DNSIAQPLSA SRTQGTGAVA TNNCSSSIES PSTTWPTSEA  240
VEQENMLRPL RAMPDFAQVY SFLGSIFDPD TSGHLQTLKA MDPIDVETVL LLMRNLSMNL  300
TSPNFAAHLS LLSSCNSGGD QIKSEGMENL GSPQSCHLPF MVTSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0204000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708710.0AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643724.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W32e-96RVE6_ARATH; Protein REVEILLE 6
TrEMBLI1Q4H70.0I1Q4H7_ORYGL; Uncharacterized protein
STRINGORGLA06G0204000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]