PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0194700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 371aa    MW: 39218.2 Da    PI: 6.6161
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0194700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217e-075398342
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        ++C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  ORGLA06G0194700.1 53 VWVCEVCEVAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 98
                       689*****************************44677777888775 PP
2CCT70.34.7e-24295338144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  ORGLA06G0194700.1 295 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 338
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.11050IPR000315B-box-type zinc finger
SMARTSM003366.0E-135198IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3815198IPR000315B-box-type zinc finger
CDDcd000212.88E-75498No hitNo description
PfamPF062038.5E-18295337IPR010402CCT domain
PROSITE profilePS5101716.896295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMELRKYWGV GGRRCGACEA SPAAVHCRGC GGVYLCTACD ARPGHARAAH ERVWVCEVCE  60
VAPAAVTCKA DAAVLCAACD ADIHDANPLA RRHARVPVAP IGSAAAAAVA AEAMLFGVAA  120
AGAEAEAVEE KAAAEHHHHQ QRQQHGALNL NVEAKDMKLD YLFSDLDPYL NVEFARFPHA  180
DSVVPNGAGA GAAIELDFTC GLGVGVGGAK QSYSSYTATD LAHSGSSSEV GVVPEAMCGG  240
GGAIDLDFTR PKPQPYMPYT ATPPPSHSVV SAQMSSSVVD VGVVPERAAA MGEGREARLM  300
RYREKRKNRR FEKTIRYASR KAYAETRPRI KGRFAKRADH DADDADADAD DPAAIPSSYM  360
LDFGYGVVPS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0194700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4066130.0CU406613.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641209.10.0zinc finger protein CONSTANS-LIKE 5
TrEMBLI1Q4840.0I1Q484_ORYGL; Uncharacterized protein
STRINGORGLA06G0194700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-18CONSTANS-like 2