PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0190300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 694aa    MW: 76496.4 Da    PI: 5.7451
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0190300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.7e-25186239155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        ++r++WtpeLH+ Fv av++L G ++A+P++il++mkv+ +t+e+++SHLQkYRl
  ORGLA06G0190300.1 186 RQRVVWTPELHRDFVIAVHEL-GVDRAVPRKILRMMKVDYMTRENIASHLQKYRL 239
                        58*******************.********************************8 PP
2Response_reg63.78.9e-22181261109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll+ +l++ +y + + ++d+  al++l+e+   +Dl++ D+ m +mdG++ll+ i  e  +lp+i+ +a+ge e++ + +
  ORGLA06G0190300.1  18 VLAVDDSPVCLMLLEALLRRCKY-QPTMTRDAATALQMLRERPgdFDLVISDVHMLDMDGFKLLELIGLEM-DLPVIMQSANGELETMMKGV 107
                        799********************.9999***********988888**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l+Kp++ +++ +
  ORGLA06G0190300.1 108 THGACDYLVKPVSLKDIQN 126
                        *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.56E-3214137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-3615164No hitNo description
SMARTSM004481.1E-2416128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.01317132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-1918126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.35E-2219131No hitNo description
SuperFamilySSF466893.76E-18183243IPR009057Homeodomain-like
PROSITE profilePS5129410.269183242IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-26185244IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-23187239IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAATQATAAR KFPEGLRVLA VDDSPVCLML LEALLRRCKY QPTMTRDAAT ALQMLRERPG  60
DFDLVISDVH MLDMDGFKLL ELIGLEMDLP VIMQSANGEL ETMMKGVTHG ACDYLVKPVS  120
LKDIQNIWQH VWRKRKLDIR NHSGGYNDGG ELVGATRTKR KYTRKMRNDG DNYGENKENM  180
DSTLKRQRVV WTPELHRDFV IAVHELGVDR AVPRKILRMM KVDYMTRENI ASHLQKYRLY  240
LKRISTQTGM DPDQFPEKWK YMNELDALKN YCENGRYRLT PAIASSSSSN PFARMNSASA  300
LATNGFLPTH SVQLKNSQRN MAMGTVGHGG SPGNNPVFQP LQNSSNARKC FPSGPSGSSF  360
ANISNGLVLD TDDSGSSYAG MFCKSMWETS NGSPSCHSGN SSANKSNNGV SAPANQFQVQ  420
SKCGFSAPAN QFPVQSNCGF SAPANQYQVQ SNGGFSVPAN QFPVQSNGEF LAPTNQFPVQ  480
YPEVNNQPLV QMNQSSTNHF STIGNDYQFP DLANCSKYWQ PTAPSMFPDL GHNDGTSFRP  540
SQANIANINQ LSSFAASSGQ EPMFGDELHG QMSPIMSTIS LSDFDDQMGS FNIGNDTSPA  600
EMMHDNFSLG SDSNTSSSTP TDSSFGSTFP DFHLDSPEMP AQMLNGGDED GILLPVLDDT  660
VDQQDLFDQL DENNGREKLG SGRCVRKGPF ECFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-20185245464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0190300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035170.0AP003517.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02.
GenBankAP0040080.0AP004008.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1226_A12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882103.10.0two-component response regulator ORR25
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLI1Q4400.0I1Q440_ORYGL; Uncharacterized protein
STRINGORGLA06G0190300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-79response regulator 12