PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0189900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 314aa    MW: 34780.5 Da    PI: 6.5771
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0189900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072492822154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  ORGLA06G0189900.1 249 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 282
                        569*****************************87 PP
2ELK29.31.9e-10203224122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++L+++++E++
  ORGLA06G0189900.1 203 ELKHELKQGYREKLVDIREEIL 224
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194488IPR005540KNOX1
PfamPF037901.5E-164784IPR005540KNOX1
SMARTSM012565.3E-2492147IPR005541KNOX2
PfamPF037911.3E-16100146IPR005541KNOX2
SMARTSM011880.0014203224IPR005539ELK domain
PfamPF037892.9E-6203224IPR005539ELK domain
PROSITE profilePS5121310.196203223IPR005539ELK domain
PROSITE profilePS5007111.596223286IPR001356Homeobox domain
SMARTSM003893.3E-10225290IPR001356Homeobox domain
SuperFamilySSF466891.03E-15225290IPR009057Homeodomain-like
CDDcd000864.46E-11226287No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24230287IPR009057Homeodomain-like
PfamPF059203.4E-18243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGWEREKAAI AAHPLYERLL  60
EAHVACLRVA TPVDQLPRID AQIAARPPPL AAXXXXXXGE ELDLFMTHYV LLLCSFKEQL  120
QQHVRVHAME AVMACWELEQ TLQSLTGASP GEGSGATMSD DEDNQVDSES NMFDGNDGSD  180
GMGFGPLMLT EGERSLVERV RQELKHELKQ GYREKLVDIR EEILRKRRAG KLPGDTASTL  240
KAWWQAHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPAS SSSDKSKRKR  300
KRSNAGDGKA EQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279301RKRNWHSNPASSSSDKSKRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0189900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414380.0AK241438.1 Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644389.11e-179homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW41e-180KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLI1Q4360.0I1Q436_ORYGL; Uncharacterized protein
STRINGORGLA06G0189900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-142KNOTTED1-like homeobox gene 3