PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0184400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 201aa    MW: 22435.2 Da    PI: 5.8384
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0184400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-064869426
                       ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                       + C +f++ G+C yGd C+  H+
  ORGLA06G0184400.1 48 PVCEDFLK-GYCAYGDECHKKHS 69
                       67******.*********97776 PP
2zf-CCCH20.86.8e-077293627
                       -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                       C+ f +tG+C+ G+rCk +H++
  ORGLA06G0184400.1 72 CPVFEATGECPQGSRCKLHHPK 93
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.7891343IPR000571Zinc finger, CCCH-type
SMARTSM00356191342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.764471IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-54470IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-44869IPR000571Zinc finger, CCCH-type
SMARTSM003561.17193IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.4377294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
EVIHSSLTSL LSLSSAKKCR AYILASHAGL CTNIACPYRH VKVNLNAPVC EDFLKGYCAY  60
GDECHKKHSY VCPVFEATGE CPQGSRCKLH HPKSKVKSKS RRPDFLQNSS WGRYFDASID  120
HQDETRKVSL DEDEREKPQR VFSDGDLGFI SLDDDADEDV TALDASDDIP LMELDSGDLS  180
AQTDNLDALI KPLRIMRTAR V
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0184400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643042.11e-116uncharacterized protein LOC4341610 isoform X1
RefseqXP_015643043.11e-116uncharacterized protein LOC4341610 isoform X2
TrEMBLI1Q3Y11e-146I1Q3Y1_ORYGL; Uncharacterized protein
STRINGORGLA06G0184400.11e-147(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010