PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0184100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 309aa MW: 33219.2 Da PI: 8.0957

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0184100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.2	1e-19	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + ORGLA06G0184100.1 14 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 59 89****************************.*********985 PP
2	Myb_DNA-binding	52.6	1e-16	66	108	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w+ ORGLA06G0184100.1 66 RRPFTAEEDATILRAHARLGNR-WAAIARLLQ-GRTDNAVKNHWN 108 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.746	9	64	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-31	11	107	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-17	13	62	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-19	14	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-26	15	67	IPR009057	Homeodomain-like
CDD	cd00167	2.27E-16	16	58	No hit	No description
SMART	SM00717	6.3E-15	65	113	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.563	66	115	IPR017930	Myb domain
Pfam	PF00249	1.4E-14	66	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-22	68	115	IPR009057	Homeodomain-like
CDD	cd00167	3.27E-11	68	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGGGGVEADC DRIRGPWSPE EDEALRRLVE RHGARNWTAI GREIPGRSGK SCRLRWCNQL 60 SPQVERRPFT AEEDATILRA HARLGNRWAA IARLLQGRTD NAVKNHWNCS LKRKLAVATT 120 TTTTTGAAAA PGVVADAAEL VERPCKRFSP TPDSPSGSGS GSDRSDLSHG GGFGQIFRPV 180 ARTGAFEPVD CAISRRQEED PFTSLSLSLP GTDQRFNHDS AHSHFQELPS SPSPPPPPPP 240 AAAASTTQYP FTPEFAAAMQ EMIRAEVHKY MASVGVRAGC GDAGGADLHM PQLVEGVMRA 300 AAERVGRMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-38	11	115	4	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0184100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105817	0.0	AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence.
GenBank	AK121564	0.0	AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence.
GenBank	AP003573	0.0	AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CT833918	0.0	CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641187.1	1e-180	transcription factor MYB77
TrEMBL	I1Q3X8	0.0	I1Q3X8_ORYGL; Uncharacterized protein
STRING	ORGLA06G0184100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-60	myb domain protein 77